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24-Aug

Lab 1: Probability ppt pdf key

31-Aug

Lab 2: Hardy-Weinberg Equilibrium ppt pdf key

24-Aug report

7-Sep

Lab 3: Exact Tests and Estimating Genetic Variation ppt pdf key

Sample lab report

human_ssr.xls

pop_codes.txt

GenAlEx

Arlequin

31-Aug report

14-Sep

Lab 4: Inbreeding and Kinship ppt pdf key

7-Sep Report

21-Sep

Lab 5: Selection ppt pdf key excel key

14-Sep Report

28-Sep

5-Oct

Lab 6: Genetic Drift and Effective Population Size ppt pdf key

Drift Simulation Excel File

Instructions

21-Sep Report

12-Oct

Lab 7: Estimating Population Structure ppt pdf key

Revised Instructions for Structure Exercise

human_struc.xls

human_by_region.xls

AlleleA1

Structure

Structure Harvester

5-Oct Report

19-Oct

Lab 8: Individual Identity and Population Assignment ppt pdf key

OmniPop200.1

12-Oct Report

26-Oct

Lab 9: Phylogenetic Analysis ppt pdf key

mt_primates.meg

pdha1_human.meg

pg_ex2.fas

19-Oct Report

2-Nov

9-Nov

Lab 10: Coalescent Simulations ppt pdf key

pdha1_human_chimp_align.nexus

Beast

Tracer

FigTree

26-Oct Report

16-Nov

Lab 11: Detecting Departures from Neutrality ppt pdf key

Wang et al. (1999)

aspen_phy.arp

utr_mays.arp

utr_par.arp

exon_mays.arp

exon_par.arp

9-Nov Report

23-Nov

30-Nov

Lab 12: Estimating Linkage Disequilibrium ppt pdf key

aspen_phyB.arp

arab_phyC.arp

LD_aspen_phyB.xls

LD_arab_phyC.xls

human_LD.arp

Haplotype Inference by EM

16-Nov Report

7-Dec

Lab 13: Association Genetics ppt pdf

Lab Manual pdf

Course Evaluations

Tassel Tutorial Data

Tassel

User Guide

30-Nov Report